Reactome
live BioPathwaysReactome — open biological pathway database. Keyless.
5 tools
0ms auth
free tier 50 calls/day
Tools
search
required: query Cross-DB search.
Parameters
Name Type Description
query req string — types opt string — cluster opt boolean — Try it
Response
pathway
required: id Pathway record.
Parameters
Name Type Description
id req string — Try it
Response
participants
required: id Pathway participants.
Parameters
Name Type Description
id req string — Try it
Response
pathways_for_entity
required: entity_id Pathways containing an entity (by resource + id).
Parameters
Name Type Description
resource opt string — entity_id req string — species opt string — Try it
Response
orthologous_events
required: id, species Orthologous events in another species.
Parameters
Name Type Description
id req string — species req string — Try it
Response
Test with curl
The gateway speaks JSON-RPC 2.0 over HTTP POST. You can test any pack directly from the terminal.
List available tools
bash
curl -X POST https://gateway.pipeworx.io/reactome/mcp \
-H "Content-Type: application/json" \
-d '{"jsonrpc":"2.0","id":1,"method":"tools/list"}'Call a tool
bash
curl -X POST https://gateway.pipeworx.io/reactome/mcp \
-H "Content-Type: application/json" \
-d '{"jsonrpc":"2.0","id":2,"method":"tools/call","params":{"name":"search","arguments":{"query": "hello"}}}'Use with the SDK
Install @pipeworx/sdk to call tools from any TypeScript/Node project.
TypeScript
import { Pipeworx } from '@pipeworx/sdk';
const px = new Pipeworx();
const result = await px.call("search", {"query":"example"}); ask_pipeworx
// Or ask in plain English:
const answer = await px.ask("reactome — open biological pathway database");Related packs
Other Pipeworx packs in the same categories (Bio, Pathways):