@pipeworx/reactome

Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/reactome’s. Install: one-click buttons

No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.

Tools: 5

Reactome MCP — open peer-reviewed biological pathway database. Keyless.

Tools

• search(query, types?) — cross-DB search (pathway, reaction, protein, …)
• pathway(id) — full pathway record
• participants(id) — entity participants of a pathway
• pathways_for_entity(entity_id) — pathways containing the given entity
• orthologous_events(id, species) — orthologous pathways/reactions in another species

Data source

https://reactome.org/ContentService/

Tools

• search — Search the Reactome biological pathway database by keyword across all object types (Pathway, Reaction, Protein, Complex, etc.); returns stable IDs and display names grouped by type.
• pathway — Full pathway record by stable id (e.g. R-HSA-68886).
• participants — Entity participants of a pathway.
• pathways_for_entity — Pathways containing an entity, looked up by external resource id (e.g. UniProt accession).
• orthologous_events — Orthologous pathways/reactions in another species.