pathways_for_entity
Pack: reactome · Endpoint: https://gateway.pipeworx.io/reactome/mcp
Pathways containing an entity, looked up by external resource id (e.g. UniProt accession).
Parameters
| Name | Type | Required | Description |
|---|---|---|---|
resource | string | no | UniProt | ChEBI | Ensembl | NCBI | GeneCards | … (default UniProt) |
entity_id | string | yes | Identifier within the resource, e.g. “P04637” for TP53. |
species | string | no | NCBI taxonomy id as a string (default “9606” — human). |
Example call
curl -X POST https://gateway.pipeworx.io/reactome/mcp \
-H 'Content-Type: application/json' \
-d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"pathways_for_entity","arguments":{}}}'Connect
Add this to your MCP client config, or use one-click install buttons:
{
"mcpServers": {
"reactome": {
"url": "https://gateway.pipeworx.io/reactome/mcp"
}
}
}See Getting Started for client-specific install steps.