`pathways_for_entity`

Pack: reactome · Endpoint: https://gateway.pipeworx.io/reactome/mcp

Pathways containing an entity, looked up by external resource id (e.g. UniProt accession).

Parameters

Name	Type	Required	Description
`resource`	string	no	UniProt \| ChEBI \| Ensembl \| NCBI \| GeneCards \| … (default UniProt)
`entity_id`	string	yes	Identifier within the resource, e.g. “P04637” for TP53.
`species`	string	no	NCBI taxonomy id as a string (default “9606” — human).

Example call

Arguments

{
  "entity_id": "P04637"
}

curl

curl -X POST https://gateway.pipeworx.io/reactome/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"pathways_for_entity","arguments":{"entity_id":"P04637"}}}'

TypeScript (@pipeworx/sdk)

import { Pipeworx } from '@pipeworx/sdk';
const pipeworx = new Pipeworx();

const result = await pipeworx.call('pathways_for_entity', {
  "entity_id": "P04637"
});

More examples

{
  "entity_id": "CHEBI:15377",
  "resource": "ChEBI",
  "species": "9606"
}

Response shape

Always returns: items, count

Field	Type	Description
`items`	array	Pathways containing the specified entity
`count`	integer	Number of items returned.

Full JSON Schema

{
  "type": "object",
  "properties": {
    "items": {
      "type": "array",
      "description": "Pathways containing the specified entity",
      "items": {
        "type": "object",
        "properties": {
          "dbId": {
            "type": "number",
            "description": "Internal database ID"
          },
          "displayName": {
            "type": "string",
            "description": "Pathway name"
          },
          "stableId": {
            "type": "string",
            "description": "Stable identifier"
          },
          "className": {
            "type": "string",
            "description": "Type (usually Pathway)"
          },
          "schemaClass": {
            "type": "string",
            "description": "Schema class"
          },
          "species": {
            "type": "object",
            "properties": {
              "dbId": {
                "type": "number"
              },
              "displayName": {
                "type": "string"
              }
            }
          }
        }
      }
    },
    "count": {
      "type": "integer",
      "description": "Number of items returned."
    }
  },
  "required": [
    "items",
    "count"
  ]
}

Connect

Add this to your MCP client config, or use one-click install buttons:

{
  "mcpServers": {
    "reactome": {
      "url": "https://gateway.pipeworx.io/reactome/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

pathways_for_entity