@pipeworx/wikipathways
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/wikipathways’s. Install: one-click buttons
Connect to just the @pipeworx/wikipathways pack
https://gateway.pipeworx.io/wikipathways/mcp — only @pipeworx/wikipathways’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 3
Tools
- search_pathways — Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restric
- list_pathways — List all WikiPathways pathways for a single organism. Give a Latin or common name, e.g. “Homo sapiens”, “human”, or “mouse”. Returns each pathway’s id, name, link, and last revision. Keyless.
- get_pathway — Get metadata and a viewer link for one WikiPathways pathway by its WikiPathways id (e.g. “WP554”). Returns name, species, revision, and a human-viewable diagram URL. Keyless.
Tools
get_pathway— Get metadata and a viewer link for one WikiPathways pathway by its WikiPathways id (e.g. WP554 ). Returns name, species, revision, and a human-viewable diagram URL. Keyless.list_pathways— List all WikiPathways pathways for a single organism. Give a Latin or common name, e.g. Homo sapiens , human , or mouse . Returns each pathway's id, name, link, and last revision. Keyless.search_pathways— Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restric