`proteomes_search`

Pack: uniprot · Endpoint: https://gateway.pipeworx.io/uniprot/mcp

“Reference proteome for [organism]” / “complete protein set of [species]” — search UniProt reference proteomes (the curated representative protein set per organism). Use as a starting point for genome-scale protein analyses.

Parameters

Name	Type	Required	Description
`query`	string	yes
`size`	number	no

Example call

Arguments

{
  "query": "homo sapiens"
}

curl

curl -X POST https://gateway.pipeworx.io/uniprot/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"proteomes_search","arguments":{"query":"homo sapiens"}}}'

TypeScript (@pipeworx/sdk)

import { Pipeworx } from '@pipeworx/sdk';
const pipeworx = new Pipeworx();

const result = await pipeworx.call('proteomes_search', {
  "query": "homo sapiens"
});

More examples

{
  "query": "escherichia coli",
  "size": 10
}

Response shape

Field	Type	Description
`results`	array	Array of proteome entries
`facets`	array	Search facets

Full JSON Schema

{
  "type": "object",
  "description": "Reference proteome search results",
  "properties": {
    "results": {
      "type": "array",
      "description": "Array of proteome entries",
      "items": {
        "type": "object",
        "description": "Proteome result"
      }
    },
    "facets": {
      "type": "array",
      "description": "Search facets"
    }
  }
}

Connect

Add this to your MCP client config, or use one-click install buttons:

{
  "mcpServers": {
    "uniprot": {
      "url": "https://gateway.pipeworx.io/uniprot/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

proteomes_search