@pipeworx/protein-atlas
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/protein-atlas’s. Install: one-click buttons
Connect to just the @pipeworx/protein-atlas pack
https://gateway.pipeworx.io/protein-atlas/mcp — only @pipeworx/protein-atlas’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 3
Tools
- search_genes — Search the Human Protein Atlas for human genes/proteins by gene symbol or keyword. Returns each gene with its Ensembl gene id (needed by get_protein and top_tissues), synonyms, and description. Keyles
- get_protein — Get a trimmed Human Protein Atlas profile for one protein by Ensembl gene id (e.g. “ENSG00000146648”): gene, description, protein class, biological process, molecular function, RNA tissue specificit
- top_tissues — List a protein’s top-expressing human tissues by RNA expression (nTPM), highest first, for one Ensembl gene id. Use search_genes to find the Ensembl id. Keyless.
Tools
get_protein— Get a trimmed Human Protein Atlas profile for one protein by Ensembl gene id (e.g. ENSG00000146648 ): gene, description, protein class, biological process, molecular function, RNA tissue specificity/dsearch_genes— Search the Human Protein Atlas for human genes/proteins by gene symbol or keyword. Returns each gene with its Ensembl gene id (needed by get_protein and top_tissues), synonyms, and description. Keylestop_tissues— List a protein's top-expressing human tissues by RNA expression (nTPM), highest first, for one Ensembl gene id. Use search_genes to find the Ensembl id. Keyless.