get_summary

Pack: pdbe · Endpoint: https://gateway.pipeworx.io/pdbe/mcp

PDBe (Protein Data Bank in Europe, EBI): get a PDB entry summary — title, experimental method, release date, source organism, and entity counts (polypeptide/ligand/water/…). Keyless. The EBI counterpart to RCSB PDB. Pass a 4-char PDB id like “1cbs”.

Parameters

NameTypeRequiredDescription
pdb_idstringyesA 4-char PDB id, e.g. “1cbs”.

Example call

curl -X POST https://gateway.pipeworx.io/pdbe/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"get_summary","arguments":{}}}'

Connect

Add this to your MCP client config, or use one-click install buttons:

{
  "mcpServers": {
    "pdbe": {
      "url": "https://gateway.pipeworx.io/pdbe/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

Regenerated from source · build June 9, 2026