`get_summary`

Pack: pdbe · Connect: https://pipeworx.io/mcp (see Connect below for a single-pack URL)

No MCP client? Call it directly: GET https://gateway.pipeworx.io/v1/tools/get_summary for the schema, then POST the same URL with its arguments for the data.

PDBe (Protein Data Bank in Europe, EBI): get a PDB entry summary — title, experimental method, release date, source organism, and entity counts (polypeptide/ligand/water/…). Keyless. The EBI counterpart to RCSB PDB. Pass a 4-char PDB id like “1cbs”.

Parameters

Name	Type	Required	Description
`pdb_id`	string	yes	A 4-char PDB id, e.g. “1cbs”.

Example call

Arguments

{
  "pdb_id": "1cbs"
}

curl

curl -X POST https://gateway.pipeworx.io/pdbe/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"get_summary","arguments":{"pdb_id":"1cbs"}}}'

TypeScript (@pipeworx/sdk)

import { Pipeworx } from '@pipeworx/sdk';
const pipeworx = new Pipeworx();

const result = await pipeworx.call('get_summary', {
  "pdb_id": "1cbs"
});

More examples

{
  "pdb_id": "2hhb"
}

Connect

Add this to your MCP client config — every tool in the catalog, including this one — or use one-click install buttons:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://pipeworx.io/mcp"
    }
  }
}

Connect to just the pdbe pack

{
  "mcpServers": {
    "pdbe": {
      "url": "https://gateway.pipeworx.io/pdbe/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

get_summary