@pipeworx/gwas-catalog
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/gwas-catalog’s. Install: one-click buttons
Connect to just the @pipeworx/gwas-catalog pack
https://gateway.pipeworx.io/gwas-catalog/mcp — only @pipeworx/gwas-catalog’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 3
Tools
- get_snp — GWAS Catalog: look up a single-nucleotide polymorphism (SNP) by rsID. Returns functional class, chromosome/region locations, and mapped genes (with up/downstream + distance). Keyless, from EBI/NHGRI.
- snp_associations — GWAS Catalog: get trait/disease associations for a SNP (rsID) — risk allele, p-value, odds ratio per copy, beta/effect size, and risk allele frequency. Keyless, from EBI/NHGRI.
- studies_by_trait — GWAS Catalog: find genome-wide association studies for a disease/trait (EFO trait, e.g. “asthma” or “type 2 diabetes”). Returns accession, PubMed ID, title, journal, date, sample size. Keyless, from E
Tools
get_snp— GWAS Catalog: look up a single-nucleotide polymorphism (SNP) by rsID. Returns functional class, chromosome/region locations, and mapped genes (with up/downstream + distance). Keyless, from EBI/NHGRI.snp_associations— GWAS Catalog: get trait/disease associations for a SNP (rsID) — risk allele, p-value, odds ratio per copy, beta/effect size, and risk allele frequency. Keyless, from EBI/NHGRI.studies_by_trait— GWAS Catalog: find genome-wide association studies for a disease/trait (EFO trait, e.g. asthma or type 2 diabetes ). Returns accession, PubMed ID, title, journal, date, sample size. Keyless, from EBI/