@pipeworx/gtex

Connect: https://gateway.pipeworx.io/gtex/mcp · Install: one-click buttons

Tools: 5

GTEx Portal MCP — Genotype-Tissue Expression: human gene expression across ~54 tissues. Keyless.

Tools

gene(gencode_id_or_symbol) — gene metadata
median_expression(gene) — median expression across tissues
top_expressed_genes(tissue, filter_mt_gene?, num?, datasetId?) — top-expressed genes per tissue
single_tissue_eqtls(gencode_id, tissue?) — significant single-tissue eQTLs
tissues() — list of tissues

https://gtexportal.org/api/v2/

gene — Gene metadata by Gencode id or symbol.
median_expression — Median expression across tissues for a gene (TPM).
top_expressed_genes — GTEx Portal (Genotype-Tissue Expression project) — the genes with the highest median expression in one human tissue, given a GTEx tissueSiteDetailId such as Liver or Whole_Blood. Returns ranked genes
single_tissue_eqtls — Significant single-tissue eQTLs for a gene.
tissues — GTEx Portal (Genotype-Tissue Expression project) — the catalogue of human tissue sites GTEx sampled, such as Liver, Whole_Blood and Brain_Cortex. Returns each tissue’s tissueSiteDetailId, display name

gene — Gene metadata by Gencode id or symbol.
median_expression — Median expression across tissues for a gene (TPM).
single_tissue_eqtls — Significant single-tissue eQTLs for a gene.
tissues — GTEx Portal (Genotype-Tissue Expression project) — the catalogue of human tissue sites GTEx sampled, such as Liver, Whole_Blood and Brain_Cortex. Returns each tissue's tissueSiteDetailId, display name
top_expressed_genes — GTEx Portal (Genotype-Tissue Expression project) — the genes with the highest median expression in one human tissue, given a GTEx tissueSiteDetailId such as Liver or Whole_Blood. Returns ranked genes