@pipeworx/gdc

Connect: https://gateway.pipeworx.io/gdc/mcp · Install: one-click buttons

Tools: 4

Tools

  • list_projects — List NCI Genomic Data Commons cancer-genomics projects (TCGA, TARGET, CPTAC, etc.), ranked by case count. Returns project_id, name, program, primary site(s) and disease type(s). Keyless, open-access m
  • get_project — Look up a single NCI GDC project by project_id (e.g. “TCGA-BRCA”) and get its details plus summary counts (case_count, file_count). Keyless, open-access metadata.
  • search_cases — Search NCI GDC cancer cases (patients/samples) by primary site and/or project. Returns case_id, submitter_id, primary site, disease type and project_id. Keyless, open-access metadata.
  • search_files — Search NCI GDC genomic data files by project and/or data category (e.g. “Transcriptome Profiling”, “Simple Nucleotide Variation”, “DNA Methylation”). Returns file_id, file_name, data category/type/for

Tools

  • get_project — Look up a single NCI GDC project by project_id (e.g. TCGA-BRCA ) and get its details plus summary counts (case_count, file_count). Keyless, open-access metadata.
  • list_projects — List NCI Genomic Data Commons cancer-genomics projects (TCGA, TARGET, CPTAC, etc.), ranked by case count. Returns project_id, name, program, primary site(s) and disease type(s). Keyless, open-access m
  • search_cases — Search NCI GDC cancer cases (patients/samples) by primary site and/or project. Returns case_id, submitter_id, primary site, disease type and project_id. Keyless, open-access metadata.
  • search_files — Search NCI GDC genomic data files by project and/or data category (e.g. Transcriptome Profiling , Simple Nucleotide Variation , DNA Methylation ). Returns file_id, file_name, data category/type/format

Regenerated from source · build June 8, 2026