get_experiment

Pack: expression-atlas · Endpoint: https://gateway.pipeworx.io/expression-atlas/mcp

Get metadata for a single EBI Expression Atlas experiment by accession (e.g. “E-MTAB-4045”). Returns accession, description, species, type, assay count, and experimental factors.

Parameters

NameTypeRequiredDescription
accessionstringyesExperiment accession, e.g. “E-MTAB-4045”, “E-GEOD-61857”.

Example call

curl -X POST https://gateway.pipeworx.io/expression-atlas/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"get_experiment","arguments":{}}}'

Connect

Add this to your MCP client config, or use one-click install buttons:

{
  "mcpServers": {
    "expression-atlas": {
      "url": "https://gateway.pipeworx.io/expression-atlas/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

Regenerated from source · build June 9, 2026