@pipeworx/expression-atlas
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/expression-atlas’s. Install: one-click buttons
Connect to just the @pipeworx/expression-atlas pack
https://gateway.pipeworx.io/expression-atlas/mcp — only @pipeworx/expression-atlas’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 2
Tools
- search_experiments — Search EBI Expression Atlas — ~4,500 curated gene/protein expression experiments (baseline & differential) across species, tissues, and conditions. Filter by keyword (matches description/experimental
- get_experiment — Get metadata for a single EBI Expression Atlas experiment by accession (e.g. “E-MTAB-4045”). Returns accession, description, species, type, assay count, and experimental factors.
Tools
get_experiment— Get metadata for a single EBI Expression Atlas experiment by accession (e.g. E-MTAB-4045 ). Returns accession, description, species, type, assay count, and experimental factors.search_experiments— Search EBI Expression Atlas — ~4,500 curated gene/protein expression experiments (baseline & differential) across species, tissues, and conditions. Filter by keyword (matches description/experimental