@pipeworx/emdb
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/emdb’s. Install: one-click buttons
Connect to just the @pipeworx/emdb pack
https://gateway.pipeworx.io/emdb/mcp — only @pipeworx/emdb’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 2
Tools
- search_maps — Search the EBI Electron Microscopy Data Bank (EMDB) for 3D cryo-EM / electron-tomography density maps by free-text keyword (e.g. “ribosome”, “spike protein”, “apoptosis”). Returns matching maps with E
- get_map — Get a single EMDB entry by its EMDB id (e.g. “EMD-1080”). Returns a trimmed record: title, sample, structure-determination method, resolution (Angstrom), and release date. EMDB holds 3D electron-micro
Tools
get_map— Get a single EMDB entry by its EMDB id (e.g. EMD-1080 ). Returns a trimmed record: title, sample, structure-determination method, resolution (Angstrom), and release date. EMDB holds 3D electron-microssearch_maps— Search the EBI Electron Microscopy Data Bank (EMDB) for 3D cryo-EM / electron-tomography density maps by free-text keyword (e.g. ribosome , spike protein , apoptosis ). Returns matching maps with EMDB