@pipeworx/cbioportal

Connect: https://gateway.pipeworx.io/cbioportal/mcp · Install: one-click buttons

Tools: 4

Tools

  • search_studies — Search public cancer genomics studies in cBioPortal (TCGA, CPTAC, MSK, etc.) by keyword. Matches study name, study id, or cancer-type id (case-insensitive). Returns study ids, names, cancer types, and
  • get_study — Get full details for one cBioPortal cancer study by its study id (e.g. “brca_tcga_pub”, “glioma_mskcc_2019”), including description, cancer type, sample count, PMID, and citation.
  • get_gene — Resolve a gene to its Entrez gene id and canonical info via cBioPortal. Accepts a HUGO symbol (e.g. “TP53”, “BRCA1”) or an Entrez gene id. Returns entrez_gene_id, symbol, and type.
  • list_cancer_types — List cancer types defined in cBioPortal (id, display name, parent type). Useful for resolving cancer-type ids used by studies.

Tools

  • get_gene — Resolve a gene to its Entrez gene id and canonical info via cBioPortal. Accepts a HUGO symbol (e.g. TP53 , BRCA1 ) or an Entrez gene id. Returns entrez_gene_id, symbol, and type.
  • get_study — Get full details for one cBioPortal cancer study by its study id (e.g. brca_tcga_pub , glioma_mskcc_2019 ), including description, cancer type, sample count, PMID, and citation.
  • list_cancer_types — List cancer types defined in cBioPortal (id, display name, parent type). Useful for resolving cancer-type ids used by studies.
  • search_studies — Search public cancer genomics studies in cBioPortal (TCGA, CPTAC, MSK, etc.) by keyword. Matches study name, study id, or cancer-type id (case-insensitive). Returns study ids, names, cancer types, and

Regenerated from source · build June 8, 2026