@pipeworx/biosamples
Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/biosamples’s. Install: one-click buttons
Connect to just the @pipeworx/biosamples pack
https://gateway.pipeworx.io/biosamples/mcp — only @pipeworx/biosamples’s own tools, nothing else in the catalog.
No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.
Tools: 2
Tools
- search_samples — Search EBI BioSamples — metadata for biological samples (cell lines, tissues, organisms) referenced across EBI archives. Free-text search by organism, tissue, or keyword; returns matching samples with
- get_sample — Fetch a single EBI BioSamples record by accession. Returns the sample name, dates, taxId, organism, and a flattened map of its characteristics (organism, tissue, sex, cell type, etc.). Keyless.
Tools
get_sample— Fetch a single EBI BioSamples record by accession. Returns the sample name, dates, taxId, organism, and a flattened map of its characteristics (organism, tissue, sex, cell type, etc.). Keyless.search_samples— Search EBI BioSamples — metadata for biological samples (cell lines, tissues, organisms) referenced across EBI archives. Free-text search by organism, tissue, or keyword; returns matching samples with