@pipeworx/bioregistry

Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/bioregistry’s. Install: one-click buttons

No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.

Tools: 4

Bioregistry MCP — meta-registry of biomedical identifier prefixes (~1500 prefixes from UniProt, ChEBI, HPO, MONDO, RxNorm, etc.). Keyless.

Tools

• prefix(prefix) — prefix metadata (URL templates, providers, license)
• search(query, limit?) — substring search over prefixes
• resolve(curie) — resolve a CURIE (e.g. chebi:24867) to a provider URL
• prefixes(limit?, offset?) — paginate over all prefixes

Data source

https://bioregistry.io/api/

Tools

• prefix — Fetch full Bioregistry metadata for a biological database prefix (e.g. “chebi”, “hpo”, “uniprot”), including canonical URI pattern, synonyms, homepage, and cross-registry mappings.
• search — Search Bioregistry for biological database prefixes by substring match against prefix name, title, or description (e.g. “gene ontology”). Returns up to limit matching prefix records.
• resolve — Resolve a CURIE (prefix:id) to a provider URL.
• prefixes — Paginate over all registered Bioregistry prefixes (2,000+); returns full prefix records for each entry. Use limit/offset to page through the complete registry.