@pipeworx/bioregistry

Connect: https://gateway.pipeworx.io/bioregistry/mcp · Install: one-click buttons

Tools: 4

Bioregistry MCP — meta-registry of biomedical identifier prefixes (~1500 prefixes from UniProt, ChEBI, HPO, MONDO, RxNorm, etc.). Keyless.

Tools

  • prefix(prefix) — prefix metadata (URL templates, providers, license)
  • search(query, limit?) — substring search over prefixes
  • resolve(curie) — resolve a CURIE (e.g. chebi:24867) to a provider URL
  • prefixes(limit?, offset?) — paginate over all prefixes

Data source

https://bioregistry.io/api/

Tools

  • prefix — Fetch full Bioregistry metadata for a biological database prefix (e.g. “chebi”, “hpo”, “uniprot”), including canonical URI pattern, synonyms, homepage, and cross-registry mappings.
  • search — Search Bioregistry for biological database prefixes by substring match against prefix name, title, or description (e.g. “gene ontology”). Returns up to limit matching prefix records.
  • resolve — Resolve a CURIE (prefix:id) to a provider URL.
  • prefixes — Paginate over all registered Bioregistry prefixes (2,000+); returns full prefix records for each entry. Use limit/offset to page through the complete registry.

Tools

  • prefix — Fetch full Bioregistry metadata for a biological database prefix (e.g. chebi , hpo , uniprot ), including canonical URI pattern, synonyms, homepage, and cross-registry mappings.
  • prefixes — Paginate over all registered Bioregistry prefixes (2,000+); returns full prefix records for each entry. Use limit/offset to page through the complete registry.
  • resolve — Resolve a CURIE (prefix:id) to a provider URL.
  • search — Search Bioregistry for biological database prefixes by substring match against prefix name, title, or description (e.g. gene ontology ). Returns up to `limit` matching prefix records.

Regenerated from source · build July 4, 2026