`uniprot`

Pack: alphafold · Connect: https://pipeworx.io/mcp (see Connect below for a single-pack URL)

No MCP client? Call it directly: GET https://gateway.pipeworx.io/v1/tools/uniprot for the schema, then POST the same URL with its arguments for the data.

Fetch AlphaFold structure prediction metadata (PDB/CIF/PAE download URLs, pLDDT scores) by UniProt accession (e.g. “P00533”); equivalent to prediction but takes uniprot_id explicitly.

Parameters

Name	Type	Required	Description
`uniprot_id`	string	yes

Example call

Arguments

{
  "uniprot_id": "P00533"
}

curl

curl -X POST https://gateway.pipeworx.io/alphafold/mcp \
  -H 'Content-Type: application/json' \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/call","params":{"name":"uniprot","arguments":{"uniprot_id":"P00533"}}}'

TypeScript (@pipeworx/sdk)

import { Pipeworx } from '@pipeworx/sdk';
const pipeworx = new Pipeworx();

const result = await pipeworx.call('uniprot', {
  "uniprot_id": "P00533"
});

More examples

{
  "uniprot_id": "Q13547"
}

Response shape

Field	Type	Description
`items`	array
`count`	number

Full JSON Schema

{
  "type": "object",
  "properties": {
    "items": {
      "type": "array",
      "items": {
        "type": "object",
        "properties": {
          "toolUsed": {
            "type": "string"
          },
          "providerId": {
            "type": "string"
          },
          "entityType": {
            "type": "string"
          },
          "isUniProt": {
            "type": "boolean"
          },
          "modelEntityId": {
            "type": "string"
          },
          "modelCreatedDate": {
            "type": "string"
          },
          "sequenceVersionDate": {
            "type": "string"
          },
          "globalMetricValue": {
            "type": "number"
          },
          "fractionPlddtVeryLow": {
            "type": "number"
          },
          "fractionPlddtLow": {
            "type": "number"
          },
          "fractionPlddtConfident": {
            "type": "number"
          },
          "fractionPlddtVeryHigh": {
            "type": "number"
          },
          "latestVersion": {
            "type": "number"
          },
          "allVersions": {
            "type": "array",
            "items": {
              "type": "number"
            }
          },
          "sequence": {
            "type": "string"
          },
          "sequenceStart": {
            "type": "number"
          },
          "sequenceEnd": {
            "type": "number"
          },
          "sequenceChecksum": {
            "type": "string"
          },
          "isUniProtReviewed": {
            "type": "boolean"
          },
          "gene": {
            "type": "string"
          },
          "uniprotAccession": {
            "type": "string"
          },
          "uniprotId": {
            "type": "string"
          },
          "uniprotDescription": {
            "type": "string"
          },
          "taxId": {
            "type": "number"
          },
          "organismScientificName": {
            "type": "string"
          },
          "isUniProtReferenceProteome": {
            "type": "boolean"
          },
          "chainId": {
            "type": "string"
          },
          "bcifUrl": {
            "type": "string"
          },
          "cifUrl": {
            "type": "string"
          },
          "pdbUrl": {
            "type": "string"
          },
          "paeImageUrl": {
            "type": "string"
          },
          "msaUrl": {
            "type": "string"
          },
          "plddtDocUrl": {
            "type": "string"
          },
          "paeDocUrl": {
            "type": "string"
          },
          "amAnnotationsUrl": {
            "type": "string"
          },
          "amAnnotationsHg19Url": {
            "type": "string"
          },
          "amAnnotationsHg38Url": {
            "type": "string"
          },
          "isComplex": {
            "type": "boolean"
          },
          "entryId": {
            "type": "string"
          },
          "uniprotSequence": {
            "type": "string"
          },
          "uniprotStart": {
            "type": "number"
          },
          "uniprotEnd": {
            "type": "number"
          },
          "isReferenceProteome": {
            "type": "boolean"
          },
          "isReviewed": {
            "type": "boolean"
          }
        }
      }
    },
    "count": {
      "type": "number"
    }
  },
  "description": "Full prediction metadata and structure file URLs"
}

Connect

Add this to your MCP client config — every tool in the catalog, including this one — or use one-click install buttons:

{
  "mcpServers": {
    "pipeworx": {
      "url": "https://pipeworx.io/mcp"
    }
  }
}

Connect to just the alphafold pack

{
  "mcpServers": {
    "alphafold": {
      "url": "https://gateway.pipeworx.io/alphafold/mcp"
    }
  }
}

See Getting Started for client-specific install steps.

uniprot