@pipeworx/alphafold

Connect: https://pipeworx.io/mcp — every tool in the catalog, including @pipeworx/alphafold’s. Install: one-click buttons

No MCP client? Skip the connection: POST https://gateway.pipeworx.io/v1/tools/search_packs {"query":"..."} to find a tool below, GET /v1/tools/<name> for its schema, POST the same URL with arguments for the data — see For AI agents.

Tools: 4

EBI AlphaFold Protein Structure Database MCP — predicted 3-D protein structures for ~214 M sequences. Keyless.

Tools

• prediction(qualifier) — full prediction metadata + file URLs (PDB, CIF, PAE)
• summary(qualifier) — short structure summary
• annotations(qualifier, type?) — sequence-level annotations (regions of low pLDDT, etc)
• uniprot(uniprot_id) — same as prediction but explicit UniProt accession

qualifier is a UniProt accession (e.g. P00533).

Data source

https://alphafold.ebi.ac.uk/api/

Tools

• prediction — Full prediction metadata + structure file URLs (PDB, CIF, PAE).
• summary — Short summary for a prediction (organism, sequence, mean pLDDT).
• annotations — Sequence-level annotations (e.g. MUTAGEN, LOW_CONFIDENCE_REGIONS).
• uniprot — Fetch AlphaFold structure prediction metadata (PDB/CIF/PAE download URLs, pLDDT scores) by UniProt accession (e.g. “P00533”); equivalent to prediction but takes uniprot_id explicitly.