MetaboLights

live Utility

MetaboLights MCP — EBI's metabolomics study repository.

2 tools
0ms auth
free tier 50 calls/day

Tools

search_studies

Search EBI MetaboLights, the metabolomics (metabolite / small-molecule) study repository, by keyword — disease, metabolite, organism, or analytical technique (e.g. "diabetes", "glucose NMR", "Homo sap

No parameters required.

▶ Try it
get_study

Fetch metadata for a single MetaboLights study by its accession (e.g. "MTBLS1"): title, full description, and the organisms studied (species + tissue/part). Keyless.

No parameters required.

▶ Try it

Test with curl

The gateway speaks JSON-RPC 2.0 over HTTP POST. You can test any pack directly from the terminal.

List available tools
bash 
curl -X POST https://gateway.pipeworx.io/metabolights/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":1,"method":"tools/list"}'
Call a tool
bash 
curl -X POST https://gateway.pipeworx.io/metabolights/mcp \
  -H "Content-Type: application/json" \
  -d '{"jsonrpc":"2.0","id":2,"method":"tools/call","params":{"name":"search_studies","arguments":{}}}'

Use with the SDK

Install @pipeworx/sdk to call tools from any TypeScript/Node project.

TypeScript 
import { Pipeworx } from '@pipeworx/sdk';
const px = new Pipeworx();
const result = await px.call("search_studies", {});
ask_pipeworx 
// Or ask in plain English:
const answer = await px.ask("metabolights mcp — ebi's metabolomics study repository");