@pipeworx/wikipathways

Connect: https://gateway.pipeworx.io/wikipathways/mcp · Install: one-click buttons

Tools: 3

Tools

  • search_pathways — Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restric
  • list_pathways — List all WikiPathways pathways for a single organism. Give a Latin or common name, e.g. “Homo sapiens”, “human”, or “mouse”. Returns each pathway’s id, name, link, and last revision. Keyless.
  • get_pathway — Get metadata and a viewer link for one WikiPathways pathway by its WikiPathways id (e.g. “WP554”). Returns name, species, revision, and a human-viewable diagram URL. Keyless.

Tools

  • get_pathway — Get metadata and a viewer link for one WikiPathways pathway by its WikiPathways id (e.g. WP554 ). Returns name, species, revision, and a human-viewable diagram URL. Keyless.
  • list_pathways — List all WikiPathways pathways for a single organism. Give a Latin or common name, e.g. Homo sapiens , human , or mouse . Returns each pathway's id, name, link, and last revision. Keyless.
  • search_pathways — Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restric

Regenerated from source · build June 9, 2026